PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012939-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SRS
Protein Properties Length: 203aa    MW: 22126 Da    PI: 8.6513
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012939-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702170.96.4e-53141444154
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 
                         g+++CqdCGnqakk+C+++RCRtCC+++gf+C+thvkstWvp ++r +rqqqlaa   +   + + +++kr+r+             +ss+
  WALNUT_00012939-RA  14 GGSRCQDCGNQAKKECEYMRCRTCCRNKGFQCQTHVKSTWVPLYRRHQRQQQLAAVLPQ---HLRGHNPKRHRQI------------TSSG 89 
                         7889*************************************************998544...4556677777764............2222 PP

              DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              ++ ++lP+ev++ a f+c+rvssvdd+ +e+aYqt+v+igGhvfkG+LydqG+e+
  WALNUT_00012939-RA  90 -----SDEANLPAEVHTVATFSCIRVSSVDDAVAEYAYQTSVEIGGHVFKGMLYDQGPES 144
                         .....34567************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-5215143IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.9E-261859IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.9E-2395142IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MMMRQGGGGG GGIGGSRCQD CGNQAKKECE YMRCRTCCRN KGFQCQTHVK STWVPLYRRH  60
QRQQQLAAVL PQHLRGHNPK RHRQITSSGS DEANLPAEVH TVATFSCIRV SSVDDAVAEY  120
AYQTSVEIGG HVFKGMLYDQ GPESRYAAGE SSSLTLQPVN AAALAPVTTI NSATAEPLHP  180
PICPFPFTAN FMPGTQFLQR PTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047676.13e-78PREDICTED: protein SHI RELATED SEQUENCE 1
RefseqXP_011047685.13e-78PREDICTED: protein SHI RELATED SEQUENCE 1
SwissprotQ9XGX06e-53SHI_ARATH; Protein SHORT INTERNODES
TrEMBLB9HRI14e-77B9HRI1_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0009s12450.11e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.18e-55Lateral root primordium (LRP) protein-related